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Easy metrics based on replicate and precursor annotation values#1210

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ankurjuneja wants to merge 17 commits into
release26.3-SNAPSHOTfrom
26.3_fb_Item1046
Open

Easy metrics based on replicate and precursor annotation values#1210
ankurjuneja wants to merge 17 commits into
release26.3-SNAPSHOTfrom
26.3_fb_Item1046

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@ankurjuneja
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Rationale

https://github.com/LabKey/internal-issues/issues/1046

Related Pull Requests

Changes

  • Add AnnotationName column to QCMetricConfiguration to store the backing annotation name for annotation-based metrics
  • Extend OutlierGenerator SQL generation to join ReplicateAnnotation (run-scoped) or PrecursorChromInfoAnnotation (precursor-scoped) when a metric has an AnnotationName.
  • Add plain JS/jQuery dialog (AddNewAnnotationMetricWindow.js) for creating and editing annotation-backed metrics.

@ankurjuneja ankurjuneja marked this pull request as ready for review May 18, 2026 20:43
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A few minor suggestions and a larger request to make one of the other metric dialogs consistent with this new approach.

Comment thread resources/schemas/dbscripts/postgresql/targetedms-26.007-26.008.sql Outdated
Comment thread resources/views/configureQCMetric.html Outdated
});
jQuery('#createNewTraceMetricButton').click(function() {
LABKEY.internal.ConfigureQCMetrics.addNewMetric('trace')
LABKEY.internal.ConfigureQCMetrics.addNewMetric('trace');
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Use a constant here and other places, including for annotation

Comment thread resources/web/PanoramaPremium/window/AddNewAnnotationMetricWindow.js Outdated
else if (configuration.getAnnotationName() != null)
{
// annotation-backed metrics: escape the annotation name for SQL string literal
String escapedName = configuration.getAnnotationName().replace("'", "''");
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Let's use the metric name instead of the annotation name.

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using metricName as label

function getAnnotationTarget() {
return $('input[name="annotationType"]:checked').val() === 'precursor'
? 'precursor_result'
: 'replicate';
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In the custom query metric dialog and in the table of metrics we use "run" instead of "replicate". I think "replicate" is better. Can you update the other dialog and table to be consistent with the Precursor and Replicate?

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done

const isPrecursor = op === 'update' && metric.PrecursorScoped;
const title = op === 'insert' ? 'Add Annotation-Backed Metric' : 'Edit Annotation-Backed Metric';

return '<div id="' + DIALOG_ID + '" style="position:fixed;top:0;left:0;width:100%;height:100%;background:rgba(0,0,0,0.5);z-index:9999;display:flex;align-items:center;justify-content:center;">'
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This is somewhat frustratingly inconsistent with the query based custom metric dialog, which has almost identical controls. The fields are in different orders, we use a radio vs a drop-down for replicate vs precursor, and the button layout is different.

While I'd like to refactor all of this into React soon, can you adapt the query metric dialog to use this plain HTML/JS approach too?

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refactored

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2 participants